gov.nih.nlm.nls.stmt.Meta

Class Cuis

java.lang.Object

gov.nih.nlm.nls.stmt.Meta.Cuis

public class Cuis
extends java.lang.Object

This program is used to find CUIs for a tem. It reads normalized String(key) and Cuis (values) from normTermCui.data (non-suppress only from MRXNS_ENG.RRF) and load in to a Hashtable<String, HashSet<String>>. This program is also replaced by database to improve performance.

History:

Version:

V-2015

Author:

NLM NLS Development Team

Method Summary

Methods

Modifier and Type	Method and Description
static java.util.Vector<java.lang.String>	FindCuis(java.lang.String term, gov.nih.nlm.nls.lvg.Api.NormApi normApi, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> cuiTable) Find unique CUIs for a term from a CUI table.
static java.util.Vector<java.lang.String>	FindSortedCuis(java.lang.String term, gov.nih.nlm.nls.lvg.Api.NormApi normApi, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> cuiTable) Find sorted unique CUIs for a term from a CUI table.
static java.util.Vector<java.lang.String>	GetCuis(java.lang.String normTerm, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> cuiTable) Find unique CUIs for a normalized term from a CUI table.
static java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>>	GetHashTable(java.lang.String inFile, boolean verboseFlag, int lineNum) Get the the key-values table of term|CUIs by loading from a file.
static java.util.Vector<java.lang.String>	GetSortedCuis(java.lang.String normTerm, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> cuiTable) Find sorted unique CUIs for a normalized term from a CUI table.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

FindSortedCuis

public static java.util.Vector<java.lang.String> FindSortedCuis(java.lang.String term,
                                                gov.nih.nlm.nls.lvg.Api.NormApi normApi,
                                                java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> cuiTable)

Find sorted unique CUIs for a term from a CUI table. Term is normalized by LvgNorm before mapping.

Parameters:

term - the term of interestes to find CUIs

normApi - NormApi object from Lexical Tools

cuiTable - the key-values table of term|CUIs

Returns:

a collection of sorted unique CUIs for the term

FindCuis

public static java.util.Vector<java.lang.String> FindCuis(java.lang.String term,
                                          gov.nih.nlm.nls.lvg.Api.NormApi normApi,
                                          java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> cuiTable)

Find unique CUIs for a term from a CUI table. Term is normalized by LvgNorm before mapping.

Parameters:

term - the term of interestes to find CUIs

normApi - NormApi object from Lexical Tools

cuiTable - the key-values table of term|CUIs

Returns:

a collection of unique CUIs for the term

GetCuis

public static java.util.Vector<java.lang.String> GetCuis(java.lang.String normTerm,
                                         java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> cuiTable)

Find unique CUIs for a normalized term from a CUI table. No nomalization is performed in this method before mapping.

Parameters:

normTerm - the normalized term of interestes to find CUIs

cuiTable - the key-values table of term|CUIs

Returns:

a collection of unique CUIs for the term

GetSortedCuis

public static java.util.Vector<java.lang.String> GetSortedCuis(java.lang.String normTerm,
                                               java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> cuiTable)

Find sorted unique CUIs for a normalized term from a CUI table. No nomalization is performed in this method before mapping.

Parameters:

normTerm - the normalized term of interestes to find CUIs

cuiTable - the key-values table of term|CUIs

Returns:

a collection of sorted unique CUIs for the term

GetHashTable

public static java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> GetHashTable(java.lang.String inFile,
                                                                                     boolean verboseFlag,
                                                                                     int lineNum)

Get the the key-values table of term|CUIs by loading from a file.

Parameters:

inFile - the file includes norm-term|CUIs pairs to be loaded

verboseFlag - verbose flag

lineNum - loading status of line number to be displayed

Returns:

the key-values table of term|CUIs