gov.nih.nlm.nls.stmt.Tools

Class Smt

java.lang.Object

gov.nih.nlm.nls.stmt.CmdLine.CmdLine

gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

gov.nih.nlm.nls.stmt.Tools.Smt

public class Smt
extends CmdLineArgsConfig

This class is the command line tool for Synonym Mapping Tool (SMT).

• Input:
  • terms in corpus (SynonymNorm term in synonyms)
  • input term
• Output Options:
  • Concept|CUIs
  • -f:STR input file

  History:

Version:

V-2015

Author:

NLM NLS Development Team

Field Summary

Fields inherited from class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

flagHelpList_, option_, systemOption_

Fields inherited from class gov.nih.nlm.nls.stmt.CmdLine.CmdLine

fileOutput_, inReader_, outWriter_, promptFlag_, promptStr_, quitStrList_, runFlag_

Constructor Summary

Constructors

Constructor and Description
Smt() Create a LSF tool object (default).

Method Summary

Methods

Modifier and Type	Method and Description
protected void	CloseLocalObjs()
protected void	ExecuteLocalOption(gov.nih.nlm.nls.lvg.CmdLineSyntax.OptionItem nameItem)
protected void	InitLocalObjs()
static void	main(java.lang.String[] args) Test driver (command line tool) for this class.
protected void	ProcessLine(java.lang.String line)
protected void	SetLocalDefaultOption()
protected java.lang.String	SetLocalFlagStr()
protected void	SetLocalOptions()
protected void	SetToolInfo()

Methods inherited from class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

AddConfigInfoKey, ExecuteOption, GetConfig, GetConfig, GetConfigBoolean, GetConfigInfo, GetConfigInt, GetConfigStr, GetToolName, HelpMenu, SetDefaultConfigFile, SetOptionFlags, SetToolDescription, SetToolName, SetToolVersion, SetValues

Methods inherited from class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

AddOptionHelpMenu, CheckOption, GetOptions, PreProcess, ResizeWithSpace, SetSystemOptionFullName, SetValuesByCmdLineOptions

Methods inherited from class gov.nih.nlm.nls.stmt.CmdLine.CmdLine

CloseObjs, GetPromptFlag, PostProcess, Println, Process, Run, SetPrompStr, SetValuesByDefault

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Smt

public Smt()

Create a LSF tool object (default).

Method Detail

main

public static void main(java.lang.String[] args)

Test driver (command line tool) for this class.

Parameters:

args - arguments

InitLocalObjs

protected void InitLocalObjs()

Specified by:

InitLocalObjs in class CmdLine

CloseLocalObjs

protected void CloseLocalObjs()

Specified by:

CloseLocalObjs in class CmdLine

SetLocalFlagStr

protected java.lang.String SetLocalFlagStr()

Specified by:

SetLocalFlagStr in class CmdLineArgs

SetLocalOptions

protected void SetLocalOptions()

Specified by:

SetLocalOptions in class CmdLineArgs

ExecuteLocalOption

protected void ExecuteLocalOption(gov.nih.nlm.nls.lvg.CmdLineSyntax.OptionItem nameItem)

Specified by:

ExecuteLocalOption in class CmdLineArgs

SetLocalDefaultOption

protected void SetLocalDefaultOption()

Specified by:

SetLocalDefaultOption in class CmdLineArgs

ProcessLine

protected void ProcessLine(java.lang.String line)

Specified by:

ProcessLine in class CmdLine

SetToolInfo

protected void SetToolInfo()

Specified by:

SetToolInfo in class CmdLine